Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903495.1_cds_XP_016453579.1_47691
CDS Infomation

[gene=LOC107777923] [db_xref=GeneID:107777923] [protein=DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like] [protein_id=XP_016453579.1] [location=join(65462..65554,65630..65712,67061..67140,67280..67537,67636..67961,68871..68978,69236..69373,69464..69511,69878..69958,72183..72342,72918..73039)] [gbkey=CDS]
Sequence

ATGGGGTCTAAAAAAAGACCCTTTTTAACTTCATCAGCTATTGCAAAGTCAAATGAACCA
ATGGGTGTTGCAGCAGAAAAGGGTGTTTCAAAGGAAAATGTTGACAAGGAGATTCTTGTG
GAGGATATGGAAACAGTAGAGAAAATGACAGTTCCACAGCTCAGAGTGAAACTTAGGAGT
CTTGGGATTCCTTCCAGAGGTACTAAACAAGAGCTTGTTACTTCTTTGAAGACATTCCTC
GACAGCAAACTTAATGATGCAGGCAATGGATCTGTGGCACAGGAGGATCAAGTATCGTCT
GAGAAGAGTCTAGGAGTAGTCGATAACACTTCAAAAAGGAAGGCTAGAAAAGTGTCAAGT
AACCAAAGAGATGTTGCTGCATCAGAGGTTTCTAGTACTAGGAAGACGAAAAAACGAGTG
AAAGAAGACAACACCAAGGATACAAGTGCTGACATTATTGTTAAACAAGCTGAAATTACC
CTAGGGCTCTCCGCTGAATCTAATGACATCAAAGGCAAGAAGACTGTACGAGCAAAGAGA
AAAGTTTCATCATTGACCGCTTCGGCACACATTGGAGTTTCTGAGGGCGTGGATATTTCT
GTAAATCAAGATGAACCTTGGACTATTTTCGCTCACAAGAAGCCCAAAGATGGGTGGATT
GTATACAATCCTAAAACAATGAGGCCAGCTCCTCTTTCTAAGGATACAAAACATGTTAAG
TTATTGTCATGGAATGTCAATGGTTTGAGGGCTCTATTGAAGTTAAAGAATCTTTTGATA
CAGCAGCTTGCCGATAGAGAAGATTTTGATGTTCTATGCTTACAGGAAACTAAACTACAG
GATAAAGATGTTGAAGCAATCAAAGAAAGTCTCAGTGGCTATGAGAATAGCTTTTGGACA
TGCAGTGTCGCTAAGCTTGGGTATTCCGGTACTGCAATCATCTCTAGGATCAAACCACTT
TCTGTCAGATATGGTCTCGGTATACCTGATCATGATACTGAAGGACGACTTGTCACGGTG
GAATTTGATAACTTCTATTTACTGTGTGGATATGTTCCAAATTCTGGCGATGGACTACGA
CGATTGACGTACAGAATTACAGAGTGGGATCCTTCTCTTGGCAATTACATGAAAGAGCTA
GAAAAGTCAAAACCTGTTGTTTTGACTGGTGATCTGAATTGTGCGCACGAGGAGATAGAT
ATTTATAATCCTGCTGGAAATAAAAGAAGTGCAGGATTTACTGAAGAAGAGAGACAGTCC
TTTGAAACAAACTTTTTAAACAAGGGGTTCGTAGATACATTCAGGAAGCAGCATCCTGGT
GTCGTTGGTTATACTTACTGGGGTTACCGCCATGGTGGACGTAAAACTAATAAAGGATGG
CGACTCGACTACTTCCTTGTCTCAGAACGCATTGCTGACAACGTGCACGACTCCTACATT
CTGCCAGATGTAGATGGCAGTGATCACAGTCCCATTGGCCTTATCCTGAAGCTGTAG

Peptide Sequence

PEP ID

XP_016453579.1
PEP Infomation

PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like [Nicotiana tabacum]
Sequence

MGSKKRPFLTSSAIAKSNEPMGVAAEKGVSKENVDKEILVEDMETVEKMTVPQLRVKLRS
LGIPSRGTKQELVTSLKTFLDSKLNDAGNGSVAQEDQVSSEKSLGVVDNTSKRKARKVSS
NQRDVAASEVSSTRKTKKRVKEDNTKDTSADIIVKQAEITLGLSAESNDIKGKKTVRAKR
KVSSLTASAHIGVSEGVDISVNQDEPWTIFAHKKPKDGWIVYNPKTMRPAPLSKDTKHVK
LLSWNVNGLRALLKLKNLLIQQLADREDFDVLCLQETKLQDKDVEAIKESLSGYENSFWT
CSVAKLGYSGTAIISRIKPLSVRYGLGIPDHDTEGRLVTVEFDNFYLLCGYVPNSGDGLR
RLTYRITEWDPSLGNYMKELEKSKPVVLTGDLNCAHEEIDIYNPAGNKRSAGFTEEERQS
FETNFLNKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSERIADNVHDSYI
LPDVDGSDHSPIGLILKL

Transcript Sequence

Gene sequence data has not been registered.